Package: deltaccd 1.0.4

Jake Hughey

deltaccd: Quantify Rhythmic Gene Co-Expression Relative to a Reference

Infer progression of circadian rhythms in transcriptome data in which samples are not labeled with time of day and coverage of the circadian cycle may be incomplete. See Shilts et al. (2018) <doi:10.7717/peerj.4327>.

Authors:Jake Hughey [aut, cre], Elliot Outland [aut]

deltaccd_1.0.4.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
deltaccd/json (API)

# Install 'deltaccd' in R:
install.packages('deltaccd', repos = c('https://hugheylab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hugheylab/deltaccd/issues

Datasets:
  • GSE19188 - Gene expression data for GSE19188.

On CRAN:

Conda:

3.00 score 1 stars 4 scripts 357 downloads 5 exports 25 dependencies

Last updated from:ee634ebb27. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK158
source / vignettesOK197
linux-releaseOK139
macos-releaseOK113
macos-oldrelOK94
windows-develOK76
windows-releaseOK74
windows-oldrelOK100
wasm-releaseOK135

Exports:calcCCDcalcDeltaCCDgetRefCorplotHeatmapplotRefHeatmap

Dependencies:clicodetoolscpp11data.tabledigestdoRNGfarverforeachggplot2gluegtableisobanditeratorslabelinglifecycleR6RColorBrewerrlangrngtoolsS7scalesstatmodvctrsviridisLitewithr