Package: deltaccd 1.0.4

Jake Hughey

deltaccd: Quantify Rhythmic Gene Co-Expression Relative to a Reference

Infer progression of circadian rhythms in transcriptome data in which samples are not labeled with time of day and coverage of the circadian cycle may be incomplete. See Shilts et al. (2018) <doi:10.7717/peerj.4327>.

Authors:Jake Hughey [aut, cre], Elliot Outland [aut]

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NEWS

# Install 'deltaccd' in R:
install.packages('deltaccd', repos = c('https://hugheylab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hugheylab/deltaccd/issues

Pkgdown site:https://deltaccd.hugheylab.org

Datasets:
  • GSE19188 - Gene expression data for GSE19188.

On CRAN:

3.00 score 2 scripts 263 downloads 5 exports 36 dependencies

Last updated 2 years agofrom:ee634ebb27. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 18 2025
R-4.5-winOKFeb 18 2025
R-4.5-macOKFeb 18 2025
R-4.5-linuxOKFeb 18 2025
R-4.4-winOKFeb 18 2025
R-4.4-macOKFeb 18 2025
R-4.3-winOKFeb 18 2025
R-4.3-macOKFeb 18 2025

Exports:calcCCDcalcDeltaCCDgetRefCorplotHeatmapplotRefHeatmap

Dependencies:clicodetoolscolorspacedata.tabledigestdoRNGfansifarverforeachggplot2gluegtableisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangrngtoolsscalesstatmodtibbleutf8vctrsviridisLitewithr