Package: deltaccd 1.0.4

Jake Hughey

deltaccd: Quantify Rhythmic Gene Co-Expression Relative to a Reference

Infer progression of circadian rhythms in transcriptome data in which samples are not labeled with time of day and coverage of the circadian cycle may be incomplete. See Shilts et al. (2018) <doi:10.7717/peerj.4327>.

Authors:Jake Hughey [aut, cre], Elliot Outland [aut]

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deltaccd.pdf |deltaccd.html✨
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NEWS

# Install 'deltaccd' in R:
install.packages('deltaccd', repos = c('https://hugheylab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hugheylab/deltaccd/issues

Pkgdown site:https://deltaccd.hugheylab.org

Datasets:
  • GSE19188 - Gene expression data for GSE19188.

On CRAN:

Conda:

3.00 score 2 scripts 232 downloads 5 exports 36 dependencies

Last updated 2 years agofrom:ee634ebb27. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 20 2025
R-4.5-winOKMar 20 2025
R-4.5-macOKMar 20 2025
R-4.5-linuxOKMar 20 2025
R-4.4-winOKMar 20 2025
R-4.4-macOKMar 20 2025
R-4.4-linuxOKMar 20 2025
R-4.3-winOKMar 20 2025
R-4.3-macOKMar 20 2025

Exports:calcCCDcalcDeltaCCDgetRefCorplotHeatmapplotRefHeatmap

Dependencies:clicodetoolscolorspacedata.tabledigestdoRNGfansifarverforeachggplot2gluegtableisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangrngtoolsscalesstatmodtibbleutf8vctrsviridisLitewithr