{
  "_id": "6a47e84ee06c18f0a65242b8",
  "Package": "deltaccd",
  "Type": "Package",
  "Title": "Quantify Rhythmic Gene Co-Expression Relative to a Reference",
  "Version": "1.0.4",
  "Authors@R": "c(\nperson('Jake', 'Hughey', , 'jakejhughey@gmail.com', c('aut', 'cre')),\nperson('Elliot', 'Outland', , 'ehoutland@gmail.com', 'aut'))",
  "Description": "Infer progression of circadian rhythms in transcriptome\ndata in which samples are not labeled with time of day and\ncoverage of the circadian cycle may be incomplete. See Shilts\net al. (2018) <doi:10.7717/peerj.4327>.",
  "URL": "https://deltaccd.hugheylab.org,\nhttps://github.com/hugheylab/deltaccd",
  "License": "GPL-2",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "LazyDataCompression": "gzip",
  "RoxygenNote": "7.2.2",
  "Roxygen": "list(markdown = TRUE)",
  "Config/testthat/edition": "3",
  "Repository": "https://hugheylab.r-universe.dev",
  "Date/Publication": "2022-12-01 22:36:59 UTC",
  "RemoteUrl": "https://github.com/hugheylab/deltaccd",
  "RemoteRef": "HEAD",
  "RemoteSha": "ee634ebb27f1eec847d7805577426ec084ee45f9",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-03 16:47:34 UTC",
    "User": "root"
  },
  "Author": "Jake Hughey [aut, cre],\nElliot Outland [aut]",
  "Maintainer": "Jake Hughey <jakejhughey@gmail.com>",
  "_user": "hugheylab",
  "_type": "src",
  "_file": "deltaccd_1.0.4.tar.gz",
  "_fileid": "https://r2.ropensci.org/68b52194a5029927c24d1730314eafe1df4fef3ac7c302eebf739a558fe92dcb",
  "_filesize": 932397,
  "_sha256": "68b52194a5029927c24d1730314eafe1df4fef3ac7c302eebf739a558fe92dcb",
  "_expires": "2026-10-11T16:50:20.000Z",
  "_created": "2026-07-03T16:47:34.000Z",
  "_published": "2026-07-03T16:50:22.937Z",
  "_jobs": [
    {
      "job": 85041782270,
      "time": 129,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8071543801"
    },
    {
      "job": 85041782230,
      "time": 122,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8071542145"
    },
    {
      "job": 85041782242,
      "time": 85,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8071532939"
    },
    {
      "job": 85041782296,
      "time": 87,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8071533519"
    },
    {
      "job": 85041382253,
      "time": 180,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8071509465"
    },
    {
      "job": 85041782259,
      "time": 124,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8071543054"
    },
    {
      "job": 85041782250,
      "time": 77,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8071530431"
    },
    {
      "job": 85041782235,
      "time": 71,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8071529110"
    },
    {
      "job": 85041782272,
      "time": 71,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8071529056"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/hugheylab/actions/runs/28673328862",
  "_status": "success",
  "_upstream": "https://github.com/hugheylab/deltaccd",
  "_commit": {
    "id": "ee634ebb27f1eec847d7805577426ec084ee45f9",
    "author": "Jake Hughey <jakejhughey@gmail.com>",
    "committer": "Jake Hughey <jakejhughey@gmail.com>",
    "message": "updated test snapshots.\n",
    "time": 1669934219
  },
  "_maintainer": {
    "name": "Jake Hughey",
    "email": "jakejhughey@gmail.com",
    "login": "jakejh",
    "description": "",
    "uuid": 2295314
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4",
      "role": "Depends"
    },
    {
      "package": "doRNG",
      "version": ">= 1.6.6",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "version": ">= 1.4.3",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "version": ">= 2.2.1",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "version": ">= 0.4.11",
      "role": "Imports"
    },
    {
      "package": "scales",
      "version": ">= 0.5.0",
      "role": "Imports"
    },
    {
      "package": "statmod",
      "version": ">= 1.4.30",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "version": ">= 1.14.0",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "version": ">= 1.0.11",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "vdiffr",
      "role": "Suggests"
    }
  ],
  "_owner": "hugheylab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "jakejh",
      "count": 49,
      "uuid": 2295314
    },
    {
      "user": "jschoenbachler",
      "count": 49,
      "uuid": 15148457
    },
    {
      "user": "ehoutland",
      "count": 43,
      "uuid": 8399021
    }
  ],
  "_userbio": {
    "uuid": 32131222,
    "type": "organization",
    "name": "Hughey Lab",
    "followers": 3
  },
  "_downloads": {
    "count": 316,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/deltaccd"
  },
  "_devurl": "https://github.com/hugheylab/deltaccd",
  "_pkgdown": "https://deltaccd.hugheylab.org",
  "_searchresults": 4,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/deltaccd.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/hugheylab/deltaccd",
  "_realowner": "hugheylab",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.2",
      "date": "2022-02-11"
    }
  ],
  "_exports": [
    "calcCCD",
    "calcDeltaCCD",
    "getRefCor",
    "plotHeatmap",
    "plotRefHeatmap"
  ],
  "_datasets": [
    {
      "name": "GSE19188",
      "title": "Gene expression data for GSE19188.",
      "object": "GSE19188",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "calcCCD",
      "title": "Calculate clock correlation distance (CCD).",
      "topics": [
        "calcCCD"
      ]
    },
    {
      "page": "calcDeltaCCD",
      "title": "Calculate delta clock correlation distance.",
      "topics": [
        "calcDeltaCCD"
      ]
    },
    {
      "page": "getRefCor",
      "title": "Retrieve the reference correlation matrix for circadian gene co-expression.",
      "topics": [
        "getRefCor"
      ]
    },
    {
      "page": "GSE19188",
      "title": "Gene expression data for GSE19188.",
      "topics": [
        "GSE19188"
      ]
    },
    {
      "page": "plotHeatmap",
      "title": "Visualize gene co-expression.",
      "topics": [
        "plotHeatmap"
      ]
    },
    {
      "page": "plotRefHeatmap",
      "title": "Visualize the reference pattern of gene co-expression.",
      "topics": [
        "plotRefHeatmap"
      ]
    }
  ],
  "_readme": "https://github.com/hugheylab/deltaccd/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "codetools",
    "cpp11",
    "data.table",
    "digest",
    "doRNG",
    "farver",
    "foreach",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "iterators",
    "labeling",
    "lifecycle",
    "R6",
    "RColorBrewer",
    "rlang",
    "rngtools",
    "S7",
    "scales",
    "statmod",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "deltaccd",
  "_universes": [
    "hugheylab",
    "jakejh"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.4",
      "date": "2026-07-03T16:49:46.000Z",
      "distro": "resolute",
      "commit": "ee634ebb27f1eec847d7805577426ec084ee45f9",
      "fileid": "https://r2.ropensci.org/8620c93d10165f8e2e7b633631887ca2d8cf76525254c10fb9385ad49fb9db0c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hugheylab/actions/runs/28673328862"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.4",
      "date": "2026-07-03T16:49:41.000Z",
      "distro": "resolute",
      "commit": "ee634ebb27f1eec847d7805577426ec084ee45f9",
      "fileid": "https://r2.ropensci.org/4577bbb8ef73d623ecea3f7fda6edf51a77b9f2709a30339ef481bca9ad58092",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hugheylab/actions/runs/28673328862"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.4",
      "date": "2026-07-03T16:49:05.000Z",
      "commit": "ee634ebb27f1eec847d7805577426ec084ee45f9",
      "fileid": "https://r2.ropensci.org/4f6dc19a0181bfc8cae94d26a52106b9323f48a205c2b5454ec9cb330deb50aa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hugheylab/actions/runs/28673328862"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.4",
      "date": "2026-07-03T16:49:03.000Z",
      "commit": "ee634ebb27f1eec847d7805577426ec084ee45f9",
      "fileid": "https://r2.ropensci.org/ab9b302df26095f11b2ca2234cb37a6296137093481cafc3f4e6fd53af02a899",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hugheylab/actions/runs/28673328862"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.4",
      "date": "2026-07-03T16:49:56.000Z",
      "commit": "ee634ebb27f1eec847d7805577426ec084ee45f9",
      "fileid": "https://r2.ropensci.org/613155a2622196606090388bf3eec0e095bfb5c864755b8d761a10b0e8a8876c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/hugheylab/actions/runs/28673328862"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.4",
      "date": "2026-07-03T16:48:45.000Z",
      "commit": "ee634ebb27f1eec847d7805577426ec084ee45f9",
      "fileid": "https://r2.ropensci.org/52909d9c19db29c79dae4d32c2fc985c7c1904f9d86055fc5da13bf1ae10d096",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hugheylab/actions/runs/28673328862"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.4",
      "date": "2026-07-03T16:48:41.000Z",
      "commit": "ee634ebb27f1eec847d7805577426ec084ee45f9",
      "fileid": "https://r2.ropensci.org/e33c9ecc96a8a80b7df0420cb06c3fcb9e1ee5e23611733393d75dcc37b8e327",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hugheylab/actions/runs/28673328862"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.4",
      "date": "2026-07-03T16:48:41.000Z",
      "commit": "ee634ebb27f1eec847d7805577426ec084ee45f9",
      "fileid": "https://r2.ropensci.org/a974acc3e61a5b75aa66c41d9b19b3322aa69b65ab98169514a0a728984b630f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/hugheylab/actions/runs/28673328862"
    }
  ]
}