Package: phers 1.0.5

Jake Hughey

phers: Calculate Phenotype Risk Scores

Use phenotype risk scores based on linked clinical and genetic data to study Mendelian disease and rare genetic variants. See Bastarache et al. 2018 <doi:10.1126/science.aal4043>.

Authors:Jake Hughey [aut, cre], Layla Aref [aut]

phers_1.0.5.tar.gz
phers_1.0.5.zip(r-4.7)phers_1.0.5.zip(r-4.6)phers_1.0.5.zip(r-4.5)
phers_1.0.5.tgz(r-4.6-any)phers_1.0.5.tgz(r-4.5-any)
phers_1.0.5.tar.gz(r-4.7-any)phers_1.0.5.tar.gz(r-4.6-any)
phers_1.0.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
phers/json (API)

# Install 'phers' in R:
install.packages('phers', repos = c('https://hugheylab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hugheylab/phers/issues

Pkgdown/docs site:https://phers.hugheylab.org

Datasets:

On CRAN:

Conda:

3.30 score 1 scripts 310 downloads 7 exports 11 dependencies

Last updated from:7cf555bc2b. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK150
source / vignettesOK184
linux-release-x86_64OK143
macos-release-arm64OK117
macos-oldrel-arm64OK89
windows-develOK91
windows-releaseOK101
windows-oldrelOK89
wasm-releaseOK115

Exports:getDxStatusgetGeneticAssociationsgetPhecodeOccurrencesgetResidualScoresgetScoresgetWeightsmapDiseaseToPhecode

Dependencies:backportsBEDMatrixcheckmatecodetoolscrochetdata.tableforeachiteratorslatticeMatrixsurvival