Package: limorhyde 1.0.3

Jake Hughey

limorhyde: Differential Analysis of Rhythmic Transcriptome Data

A flexible approach, inspired by cosinor regression, for differential analysis of rhythmic transcriptome data. See Singer and Hughey (2018) <doi:10.1177/0748730418813785>.

Authors:Jake Hughey [aut, cre], Jordan Singer [ctb]

limorhyde_1.0.3.tar.gz
limorhyde_1.0.3.zip(r-4.7)limorhyde_1.0.3.zip(r-4.6)limorhyde_1.0.3.zip(r-4.5)
limorhyde_1.0.3.tgz(r-4.6-any)limorhyde_1.0.3.tgz(r-4.5-any)
limorhyde_1.0.3.tar.gz(r-4.7-any)limorhyde_1.0.3.tar.gz(r-4.6-any)
limorhyde_1.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
limorhyde/json (API)

# Install 'limorhyde' in R:

install.packages('limorhyde', repos = c('https://hugheylab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hugheylab/limorhyde/issues

Pkgdown/docs site:https://limorhyde.hugheylab.org

On CRAN:

4.00 score 2 stars 6 scripts 253 downloads 3 exports 1 dependencies

Last updated from:de51f1b89a. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	143
source / vignettes	OK	182
linux-release-x86_64	OK	128
macos-release-arm64	OK	151
macos-oldrel-arm64	OK	95
windows-devel	OK	111
windows-release	OK	91
windows-oldrel	OK	88
wasm-release	OK	131

Exports:getCosinorBasis getSplineBasis limorhyde

Dependencies:pbs

Analyzing circadian transcriptome data with LimoRhyde

Rendered fromintroduction.Rmdusingknitr::rmarkdown

Last update: 2026-01-20
Started: 2018-08-29

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Basis matrix for cosinor	getCosinorBasis
Basis matrix for periodic splines	getSplineBasis
Convert a periodic time variable into components usable in linear models	limorhyde